Publications

Miguel Fuentes-Cabrera, Jonathan K. Sakkos, Daniel C. Ducat, and M Ziatdinov (2021). Investigating Carboxysome Morphology Dynamics with a Rotationally Invariant Variational Autoencoder.

Amit K. Singh, María Santos-Merino, Jonathan K. Sakkos, Berkley J. Walker, and Daniel C. Ducat (2021). Multi-layer Regulation of Rubisco in Response to Altered Carbon Status in Synechococcus elongatus PCC 7942.

Jonathan K. Sakkos, Joe Weaver, Connor Robertson, Bowen Li, Denis Taguchi, Ketan Maheshwari, Daniel C. Ducat, Paolo Zuliani, Andrew Stephen McGough, Tom Curtis, and Miguel Fuentes-Cabrera (2021). Investigating the growth of an engineered strain of Cyanobacteria with an Agent-Based Model and a Recurrent Neural Network.

Eric J. Young, Jonathan K. Sakkos, Jingcheng Huang, Jacob K. Wright, Benjamin Kachel, Miguel Fuentes-Cabrera, Cheryl A. Kerfeld, and Daniel C. Ducat (2021). Visualizing in Vivo Dynamics of Designer Nanoscaffolds.

Jonathan K. Sakkos, Sergio Hernandez-Ortiz, Katherine W. Osteryoung, Daniel C. Ducat (2021). Orthogonal Degron System for Controlled Protein Degradation in Cyanobacteria. ACS Syn Bio.

Michael Schwab, Celine Bergonzi, Jonathan K. Sakkos, Christopher Staley, Qian Zhang, Michael J. Sadowsky, Alptekin Aksan, Mikael Elias (2019). Signal disruption leads to changes in bacterial community population.

Jonathan K. Sakkos, Lawrence P. Wackett, Alptekin Aksan (2019). Enhancement of biocatalyst activity and protection against stressors using a microbial exoskeleton. Sci Rep.

Kuang Zhu, William A. Arnold, Jonathan K. Sakkos, Craig W. Davis, Paige J. Novak (2018). Achieving high-rate hydrogen recovery from wastewater using customizable alginate polymer gel matrices encapsulating biomass.

Jonathan K. Sakkos, Baris R. Mutlu, Lawrence P. Wackett, Alptekin Aksan (2017). Adsorption and Biodegradation of Aromatic Chemicals by Bacteria Encapsulated in a Hydrophobic Silica Gel.

Baris R. Mutlu, Jonathan K. Sakkos, Sujin Yeom, Lawrence P. Wackett, Alptekin Aksan (2016). Silica ecosystem for synergistic biotransformation. Sci Rep.

Joey J. Benson, Jonathan K. Sakkos, Adi Radian, Lawrence P. Wackett, Alptekin Aksan (2016). Enhanced biodegradation of atrazine by bacteria encapsulated in organically modified silica gels.

Jonathan K. Sakkos, Daniel P. Kieffer, Baris R. Mutlu, Lawrence P. Wackett, Alptekin Aksan (2015). Engineering of a Silica Encapsulation Platform for Hydrocarbon Degradation Using Pseudomonas sp. NCIB 9816-4.